Let me rephrase the “sort of works” part of my post. Here is a snapshot of my Obsidian vault:
The trouble is that many of those folders are then a few folders deep as well, but the links will go across folders. For example, the “Client Hub” note contains links to files in the Clients subfolder. When Tinderbox tries to Watch the root folder, it generates new notes based on the Ziplinks in the notes, but because it isn’t digging into the subfolders, it doesn’t know the notes already exist. There’s gotta be a way without destroying my vault structure and that’s what I’m looking for.
When I “Watch” a folder, the .md file names are not imported, which is great, but it doesn’t recognize the folders as groups. When I drag 'n drop the same folder, it DOES successfully import all the folders and subfolders, but it also includes the .md for each note, which then breaks the Ziplinks.
So close…yet so far away too!