To avoid confusion, despite the use of the [[ trigger, these are not wiki links but ordinary Tinderbox text links, created using the ‘quick links’ method.
To clarify for other readers, what is shown is that when a text link is added via the quick link method, the text anchor of notes further below in the same $Text may get offset right.
This issue is known - I’ve certainly reported it - but I’m unsure as to the state of a full fix. I can’t trigger it in the current beta, although if I recall the problem doesn’t always occur repeatably (so it may be a case of a back-of-house timing issue). For a more authoritative answer I’d email support: info@eastgate.com