- I use Tinderbox for what I call high level conceptual mapping.
- I use OPML extracts from OmniOutliner -->Workflowy. See Tinderbox topic Tinderbox as a QDA app for a basic description of the process I use. Additionally, since the time of that posting, workflowy recently implemented the concept of fractal boards that I am using as an annotation tool.
- For writing, I use Scrivener aided by Zotero and a plugin that extracts highlighted text in PDFs that can then be imported via RTF into Scrivener. I then use the split screen option in Scrivener to reference and write. The entire process is described here: How to Use Zotero and Scrivener for Research-Driven Writing - JSTOR Daily
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